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 References:

  1. Kim, R. and Guo, J-T. "PDA: an automatic and comprehensive analysis program for protein-DNA complex structures", BMC Genomics,10(Supple 1):S13, 2009
  2. Kim, R. and Guo, J-T. "Systematic analysis of short internal indels and their impact on protein folding", BMC Structural Biology, 10:24, 2010
  3. Turner, D. Kim, R. Guo, J-T. "TFinDit: transcription factor-DNA interaction data depository", BMC Bioinformatics,13:220, 2012
  4. Guo, J-T. Kim, D. Xu, D. and Xu, Y. "Improving the Performance of DomainParser for Structural Domain Partition using Neural Network", Nucleic Acids Research, 31(3):944-52.
  5. Takeda, T. Corona, RI. Guo, J-T. “A knowledge-based orientation potential for transcription factor-DNA docking”, Bioinformatics, 29(3):322-30, 2013
  6. Liu, Z.* Guo, J-T.* Li, T. Xu, Y. "Structure-based recognition of binding sites of transcription factors using an efficient protein-DNA docking approach", Proteins: Structure, Function, and Bioinformatics, 72(4), 1114-1124, 2008